Will you please suggest me the Best between M.sc.Biotech and M.Sc.Microbiology??? which one should I choose??

Well, both M.sc.Biotech and M.Sc.Microbiology are good courses and provide lots of opportunities to the candidates. Currently M.sc. Biotech course is considered good for the future prospects. You can choose this course in higher studies, else depends up on your interest and back ground.

Following are some good M.sc. Biotech colleges in India:

School of Life Sciences, University of Hyderabad
University Institute of Engineering & Technology, Punjab University
Department of Biotechnology, University of Kashmir
Jamia Millia Islamia
Department of Biochemical Engineering & Biotechnology, Indian Institute of Technology
Rajiv Gandhi Center for Biotechnology, Trivandrum
Dr BC Guha Center for Engineering & Biotechnology, University of Calcutta
Department of Biotechnology, Bharathiar University
National Institute of Pharmaceutical Education & Research
Department of Microbiology, Bangalore University
Department of Microbiology & Biotechnology Centre, Faculty of Science, The Maharaja Sayaji Rao University of Baroda
Bioinformatics Centre, University of Pune
Department of Animal Biotechnology, Madras Veterinary College, Tamilnadu Veterinary and Animal Sciences University
Department of Biotechnology, Cochin University of Science & Technology
Avinashilinagam University for Women
Department of Biotechnology, Himachal Pradesh University
Department of Biological Sciences & Bioengineering, Indian Institute of Technology, Kanpur
Guru Jambheshwar University of Science & Technology, Hisar
Department of Biotechnology, Gulbarga University
University School of Biotechnology, Guru Govind Singh Indraprasths University
Department of Biochemistry, University of Lucknow
Aligarh Muslim University
National Dairy Research Institute, Karnal
Center for Biotechnology, Anna University
Institute of Chemical Technology, University of Mumbai
Department of Biochemistry, Faculty of Science, MS University of Baroda
School of Biotechnology, Banaras Hindu University
Department of Biotechnology, University of Calicut
Sri Krishnadevaraya University
Deptt. of Studies in Applied Botany and Biotechnology, University of Mysore
Devi Ahilya Vishwavidyalaya, Indore
Department of Plant Molecular Biology & Biotechnology, Tamil Nadu Agricultural University
Department of Biotechnology, Government Science College
Sree Chitra Thirunal College of Engineering
Department of Biotechnology, Karnataka University Dharwad
Department of Biotechnology, Punjab University
School of Biotechnology, Maduari Kamraj University