Here I am giving you name of some colleges are situated in India that offer admission in M tech course on GATE Low Percentile score .

K.L. College of Engineering
Dharmsinh Desai Institute of Technology
S.G.S. Institute of Technology & Science
Mepco Schlek Engineering College
SDM College of Engineering
Kongu Engineering College
Shri Ramdeo Baba K.N. Engineering College
Muffakham Jah Engineering College
Jabalpur Engineering College
Sree Chitra Thirunal College of Engineering
G.H. Patel College of Engg & Technology
Kalinga Institute of Industrial Technology

Other colleges that accept GATE score :
IIT-Delhi
IIT-Bombay
IIT Kanpur
IISc Bangalore
IIT Roorkee
IIT Bombay
IIT Kharagpur
NIT Trichy
NIT Warangal
BITs Pillani
Delhi College of Engineering
IT BHU
Osmania University
Anna University
GITAM Institute of Technology, GITAM University, Visakhapatnam
Delhi Institute of Pharmaceutical Sciences and Research
Delhi College of Engineering, Delhi
Indraprastha University, Delhi
Jamia Hamdard University, Delhi
Government College of Engineering, Amravati
Government College of Engineering, Aurangabad
Government College of Engineering, Karad
Government College of Engineering, Pune
Government College of Pharmacy, Karad
Guru Gobind Singhji College of Engineering, Nanded
School of Planning & Architecture
Regional Power Training Institute
Netaji Subhas Institute of Technology
M.G. Institute of Integrated Rural Energy Planning & Development
Delhi Institute of Pharmaceutical Sciences and Research
Delhi College of Engineering
YMCA Institute of Engineering, Faridabad
Technological Institute of Textile & Science, Haryana
National Institute of Technology, Kurukshetra
National Council for Cement & Building Materials, Ballabhgarh
Maharishi Markandeswar Engineering College, Mullana, Ambala
Kurukshetra University, Hissar, Kurukshetra
Jamia Millia Islamia
Indraprastha University
Indian Institute of Technology
National Institute of Technology, Srinagar
Jamia Hamdard University
Govind Ballabh Pant Engineering College, Pauri
Pant College of Technology, Pant Nagar
Thapar Institute of Engineering & Technology, Patiala
Sant Longowal Institute of Engineering & Technology, Sangrur
Guru Nanak Dev University, Amritsar
Guru Nanak Dev Engineering College, Ludhiana
Dr. B.R. Ambedkar National Institute of Technology, Jalandhar
College of Agricultural Engineering, Ludhiana
C.E.D.T., Mohali