As you want to get the list of some of the best colleges of M.Sc Information Technology in India so here is the information of the same for you:

Khalsa College for Women, Amritsar - Master of Science in Information Technology
Desh Bhagat Foundation Group of Institute - Master of Science in Information Technology
Kishinchand Chellaram College of Arts Commerce and Science - Master of Science in Information Technology
PCMSD College for Women - Master of Science in Information Technology
Jethro Institute of Distance Education, Goregoan (W) - Master of Science in Information Technology
Institute of Advanced Studies in Education University - Master of Science in Information Technology & Master of Science in Computer Science Lateral Entry to 3rd Semester
Insoft Institute of IT & Management - Master of Science in Information Technology
Indus University - Master of Science in Information Technology
Ducat Institute of Professional Studies - Master Of Science in Information Technology
University of Kashmir - Master of Science in Information Technology
North Orissa University - Master Of Science in Information Technology
Lyallpur Khalsa College, Jalandhar - Master of Library and Information Technology
Enathi Rajappa Arts and Science College - Master of Science in Information Technology
Arcade Business College - Master of Science in Information Technology
Bharathiar University, Coimbatore - Master Of Science in Information Technology
Acharya Nagarjuna University Centre for Distance Education - Master of Science in Information Technology
Asian Institute of Management & Technology, Guwahati - Mastetr of Science in Information Technology
SSM College of Engineering - Master of Science in Information Technology
Anna University of Technology, Tirunelveli - Master of Science in Information Technology
Kadi Sarva Vishwavidyalaya - Master of Science in Information Technology
Jain University - Master of Science in Information Technology
Uttarakhand Open University - Master of Science in Information Technology
B.N. Patel Institute of Para Medical and Science - Master of Science in Information Technology
Maharaja Arts and Science College,Coimbatore - Master of Science in Information Technology
Sampoorna Academy of Management and Science - Master of Science in Information Technology
Amity University, Gwalior - Master of Science in Information Technology
Nimbus School of Technology and Management, Lucknow - Master Of Science in Information Technology
Indian Institute of Software Technology - Master of Science in Information Technology
Microtek College of Management & Technology, Varanasi - Master of Science in Information Technology
Noorul Islam College of Engineering, Kumaracoil - Master of Science in Information Technology
Elight College of Information Technology (ECIT) - Master of Science in Information Technology
Bhavik College, Chandigarh - Master of Science in Information Technology
Charotar University of Science & Technology - Master of Science Information Technology
Akbar Peerbhoy College of Commerce and Economics - Master of Science in Information Technology
Osmania University, Hyderabad - Master of Science in Information Systems
Sant Hira Dass Kanya Maha Vidyalaya - Master of Science in Information Technology
Chhattisgarh University - Master of Science in Information Technology
SSM College of Engineering - Master of Science in Information Technology (Integrated)
Dr Mahalingam College Of Engineering Technology - Pollachi - Master of Science in Computer Technology
Sri Jayendra Saraswathy Maha Vidyalaya College of Arts and Science, Coimbatore - Master of Science in Information Technology
Awadhesh Pratap Singh University - Master of Science (Information Technology)
Krantiguru Shyamji Krishna Verma Kachchh University (KSKV) - Master of Science in Computer Application & Information Technology (Integrated)
SRPA Adarsh Bhartiya College - Master of Science in Information Technology
Dayananda Sagar Institutions (DSI), Bangalor - Master of Science in Information Science and Engineering
LBS PG College, Jaipur - Master of Science in Information Technology
Sri Ramakrishna College of Arts and Science for Women, Coimbatore - Master of Science in Information Technology
Dr.Visvesvaraya Institute of Engineering & Technology - Master of Science in Information Technology
Apar India Institute of Management and Technology - Master of Science in Information Technology (MSc-IT)