Am I eligible to apply for the Msc microbiology after Bsc zoology??? Which are the good colleges to purse this course???????

Yes, you are eligible to pursue Msc microbiology after Bsc zoology; this is the list of colleges where you can apply:

List of M.Sc. (Microbiology) Colleges in India:

Dr. B. R. Ambedkar University, Agra - Master Of Science in Microbiology
Sankara College of Science and Commerce - Bachelor of Science in Microbiology
Jain University - Master of Science in Microbiology + Advanced Diploma in Research & Clinical Data Mgt
St. Philomenas College (Autonomous) - Master of Science in Clinical Microbiology
St. George College of Management, Science & Nursing, Bangalore - Bachelor Of Science in Microbiology
Bharathidasan University, Tiruchirapalli - Master of Science in Microbiology
Singhania University - Master of Science in Microbiology
VIT University (VIT), Vellore - Master of Science in Applied Micro Biology
Bangalore University - Master of Science in Micro Biology
Mithibai College of Arts, Chauhan Institute of Science & Amrutben Jivanlal College of Commerce and Economics, Mumbai - Master of Science in Microbiology
D.S. Institute of Paramedical Science and Hospital - Master Of Science In Microbiology
Paladugu Nagaiah Chowdary & Kotha Raghuramaiah Degree and PG college - Master of Science in Microbiology
Prof.Dhanapalan College For Women - Master Of Science in Microbiology
St. Xavier's College, Mumbai - Master of Science in Microbiology
Shivaji University - Master of Science in Microbiology
Bidhannagar College - Master of Science in Microbiology
Amity Institute of Microbial Technology - Master of Science in Microbial Technology
Vikas Degree College - Master of Science in Micro - Biology
Shrimant Madhavrao Scindia Govt. Model Science College - Master of Science in Microbiology
MES Abasaheb Garware College - Master Of Science in Microbiology
Yashwantrao Chavan Institute of Science, Satara - Master Of Science in Microbiology
Dr. C.S.N. Degree & P.G. College - Master of Science in Microbiology
Presentation College of Applied Sciences - Master of Science in Micro-Biology
Chinmaya Degree College - Master of Science in MicroBiology
Shri Shankaracharya Mahavidyalaya (SSMV), Bhilai - Master of Science in Microbiology
Shrimati Indira Gandhi College - Master Of Science in Microbiology
CMS College of Science and Commerce - Master of Science in Microbiology
Rashtrasant Tukadoji Maharaj Nagpur University - Master of Science in Micro Biology
Sri Auribindo Institute of Medical Sciences - Master of Science in Microbiology
MNR Post Graduate Colleges - Master of Science in Microbiology
Mangalore University - Master of Science in Microbiology
St Thomas College, Bhilai - Master Of Science in Microbiology
Hindusthan College of Arts and Science - Master of Science in Micro Biology
Karunya University - Master of Science in Microbiology
Prof. Dhanapalan College For Women - Master Of Science in Micro Biology
Garden City College (GCC), Bangalore - Master of Science in Microbiology
Jain University - Master of Science in Microbiology + Advanced Diploma in Research & Clinical Data Mgt
Osmania University, Hyderabad - Master of Science in Microbiology
Thiagarajar College - Master of Science in Microbiology
Al-ameen Arts, Science and Commerce College - Master of Science in Microbiology
The Oxford College of Science - Master of Science in Microbiology
The Institute of Science - Master of Science in Microbiology
St. George College of Management, Science & Nursing, Bangalore - Master Of Science in Microbiology
A.J.College of Science and Technology, Thonnakkal - Master of Science in Microbiology
Modern College of Arts, Science & Commerce - Master of Science in Microbiology
Goutham College - Master Of Science in Microbiology
Barkatullah University - Master Of Science in Microbiology
Sengamala Thayaar Educational Trust Women's College, Thiruvarur - Master of Science in Microbiology
A.V.C. College, Mannampandal - Master of Science in Microbiology
Centre for Life Long Learning - Master of Science in Microbiology
Cauvery College for Women, Tiruchirappalli - Master of Science in Microbiology
Dr.N.G.P. Arts and Science College - Master of Science in Microbiology
CMS College of Science and Commerce - Master of Science in Applied Microbiology
Indian Academy Group of Institutions, Bangalore - Master Of Science in Microbiology
School of Life & Basic Sciences, Jaipur National University - Master of Science in Microbiology
Government Science college - Bangalore - Master Of Science in Microbiology
Govt. M H College of Home Science & Science for Women - Master of Science in Microbiology
Carrer College - Master of Science in Microbiology
Deogiri College - Master of Science in Microbiology
Ganga Kaveri Group of Institutions - Master Of Science in Microbiology
Maharaja Krishnakumarsinhji Bhavnagar University - Master of Science in Microbiology and Zoology
Devi Ahilya Vishwavidyalaya - Master Of Science in Industrial Microbiology
Vignan Degree College (VDC) - Master of Science in Microbiology
M. N. Institute of Applied Sciences - Master of Science in Microbiology
MVP Samaj’s K.T.H.M College - Master of Science in Microbiology
Vivekanand Education Society's College of Arts, Science and Commerce - Master of Science in Microbiology
Dayananda Sagar Institutions (DSI), Bangalor - Master of Science in Microbiology
Krishna Department Of Science - Master of Science in Microbiology
Shri Shivaji College of Arts & Commerce, Akola - Master of Science in Microbiology
Panjab University, Chandigarh - Master of Science in Microbiology
Maharajah's Post Graduate College - Master of Science in Micro-biology
Kalinga Institute of Industrial Technology - Master of Science in Microbiology
Aurora’s Degree and PG College - Master of Science in MicroBiology
Annamalai University - Master of Science in Microbiology (Integrated Course)
Pooja Bhagavat Memorial Mahajana Post Graduate Center - Master of Science in Microbiology
St. Xavier's College, Kolkata - Master of Science in Microbiology
Rayat Shikshan Sanstha Karmaveer Bhaurao Patil College - Master of Science in Microbiology
Dr.Ram Manohar Lohia Avadh University, Faizabad - Master of Science in Microbiology
Babasaheb Bhimrao Ambedkar University, Lucknow - Master of Science in Environmental Microbiology
Udaya College of Arts and Science - Master Of Science in Micro Biology
Sinhgad College of Science - Master of Science in Microbiology
Sri Vundavilli Satyanarayana Murthy - Master of Science in Micro-biology
Selvamm Arts and Science College, Namakkal - Master Of Science in Microbiology
Sivanthi Aditanar College - Master Of Science in Microbiology
Shadan Institute of P.G Studies - Master of Science in Microbiology
Sri YNCollege - Master of Science in Microbiology
Pooja Bhagavat Memorial Mahajana Post Graduate Center - Master of Science in Microbiology
Sri Venkateshwara Institute of Distance Education - Master of Science in Microbiology
St. George College of Management, Science & Nursing - Master of Science in Microbiology
Dayanand Brajendra Swarup College - Master of Science in Microbiology
Mahatama Gandhi Institute of Applied Science - Master of Science in Microbiology